solver not pulling latest build #44

beckermr · 2020-09-10T20:27:08Z

Issue:

The solver doesn't appear to pull the latest build

(base) root@53232016349f:/# conda create -n mpi_test2 -c conda-forge python=3.7 openmpi openmpi-mpicc
Collecting package metadata (current_repodata.json): done
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: done

## Package Plan ##

  environment location: /opt/conda/envs/mpi_test2

  added / updated specs:
    - openmpi
    - openmpi-mpicc
    - python=3.7


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    _libgcc_mutex-0.1          |      conda_forge           3 KB  conda-forge
    _openmp_mutex-4.5          |            1_gnu          22 KB  conda-forge
    binutils_impl_linux-64-2.34|       h2122c62_9         9.2 MB  conda-forge
    binutils_linux-64-2.34     |      h47ac705_27          22 KB  conda-forge
    gcc_impl_linux-64-7.5.0    |      hda68d29_13        42.7 MB  conda-forge
    gcc_linux-64-7.5.0         |      hf34d7eb_27          23 KB  conda-forge
    kernel-headers_linux-64-2.6.32|      h77966d4_13         707 KB  conda-forge
    ld_impl_linux-64-2.34      |       hc38a660_9         612 KB  conda-forge
    libffi-3.2.1               |    he1b5a44_1007          47 KB  conda-forge
    libgcc-ng-9.3.0            |      h24d8f2e_16         7.8 MB  conda-forge
    libgfortran-ng-7.5.0       |      hdf63c60_16         1.3 MB  conda-forge
    libgomp-9.3.0              |      h24d8f2e_16         378 KB  conda-forge
    libstdcxx-ng-9.3.0         |      hdf63c60_16         4.0 MB  conda-forge
    mpi-1.0                    |          openmpi           4 KB  conda-forge
    ncurses-6.2                |       he1b5a44_1         993 KB  conda-forge
    openmpi-4.0.5              |       hdf1f1ad_1         3.9 MB  conda-forge
    openmpi-mpicc-4.0.5        |       h516909a_1           8 KB  conda-forge
    pip-20.2.3                 |             py_0         1.1 MB  conda-forge
    python-3.7.8               |h6f2ec95_1_cpython        53.1 MB  conda-forge
    readline-8.0               |       he28a2e2_2         281 KB  conda-forge
    setuptools-49.6.0          |   py37hc8dfbb8_0         948 KB  conda-forge
    sqlite-3.33.0              |       h4cf870e_0         1.4 MB  conda-forge
    sysroot_linux-64-2.12      |      h77966d4_13        30.2 MB  conda-forge
    tk-8.6.10                  |       hed695b0_0         3.2 MB  conda-forge
    wheel-0.35.1               |     pyh9f0ad1d_0          29 KB  conda-forge
    xz-5.2.5                   |       h516909a_1         343 KB  conda-forge
    zlib-1.2.11                |    h516909a_1009         106 KB  conda-forge
    ------------------------------------------------------------
                                           Total:       162.4 MB

The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-1_gnu
  binutils_impl_lin~ conda-forge/linux-64::binutils_impl_linux-64-2.34-h2122c62_9
  binutils_linux-64  conda-forge/linux-64::binutils_linux-64-2.34-h47ac705_27
  ca-certificates    conda-forge/linux-64::ca-certificates-2020.6.20-hecda079_0
  certifi            conda-forge/linux-64::certifi-2020.6.20-py37hc8dfbb8_0
  gcc_impl_linux-64  conda-forge/linux-64::gcc_impl_linux-64-7.5.0-hda68d29_13
  gcc_linux-64       conda-forge/linux-64::gcc_linux-64-7.5.0-hf34d7eb_27
  kernel-headers_li~ conda-forge/noarch::kernel-headers_linux-64-2.6.32-h77966d4_13
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.34-hc38a660_9
  libffi             conda-forge/linux-64::libffi-3.2.1-he1b5a44_1007
  libgcc-ng          conda-forge/linux-64::libgcc-ng-9.3.0-h24d8f2e_16
  libgfortran-ng     conda-forge/linux-64::libgfortran-ng-7.5.0-hdf63c60_16
  libgomp            conda-forge/linux-64::libgomp-9.3.0-h24d8f2e_16
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-9.3.0-hdf63c60_16
  mpi                conda-forge/linux-64::mpi-1.0-openmpi
  ncurses            conda-forge/linux-64::ncurses-6.2-he1b5a44_1
  openmpi            conda-forge/linux-64::openmpi-4.0.5-hdf1f1ad_1
  openmpi-mpicc      conda-forge/linux-64::openmpi-mpicc-4.0.5-h516909a_1
  openssl            conda-forge/linux-64::openssl-1.1.1g-h516909a_1
  pip                conda-forge/noarch::pip-20.2.3-py_0
  python             conda-forge/linux-64::python-3.7.8-h6f2ec95_1_cpython
  python_abi         conda-forge/linux-64::python_abi-3.7-1_cp37m
  readline           conda-forge/linux-64::readline-8.0-he28a2e2_2
  setuptools         conda-forge/linux-64::setuptools-49.6.0-py37hc8dfbb8_0
  sqlite             conda-forge/linux-64::sqlite-3.33.0-h4cf870e_0
  sysroot_linux-64   conda-forge/noarch::sysroot_linux-64-2.12-h77966d4_13
  tk                 conda-forge/linux-64::tk-8.6.10-hed695b0_0
  wheel              conda-forge/noarch::wheel-0.35.1-pyh9f0ad1d_0
  xz                 conda-forge/linux-64::xz-5.2.5-h516909a_1
  zlib               conda-forge/linux-64::zlib-1.2.11-h516909a_1009


Proceed ([y]/n)? n


CondaSystemExit: Exiting.

Here is what is available.

(base) root@53232016349f:/# conda search gcc_impl_linux-64
Loading channels: done
# Name                       Version           Build  Channel             
gcc_impl_linux-64              7.3.0      hd420e75_4  conda-forge         
gcc_impl_linux-64              7.3.0      hd420e75_5  conda-forge         
gcc_impl_linux-64              7.5.0     hda68d29_10  conda-forge         
gcc_impl_linux-64              7.5.0     hda68d29_11  conda-forge         
gcc_impl_linux-64              7.5.0     hda68d29_12  conda-forge         
gcc_impl_linux-64              7.5.0     hda68d29_13  conda-forge         
gcc_impl_linux-64              7.5.0     hdb87b24_14  conda-forge         
gcc_impl_linux-64              7.5.0     hdb87b24_15  conda-forge         
gcc_impl_linux-64              7.5.0     hdb87b24_16  conda-forge         
gcc_impl_linux-64              8.4.0     h4f5b6c9_14  conda-forge         
gcc_impl_linux-64              8.4.0     h4f5b6c9_15  conda-forge         
gcc_impl_linux-64              8.4.0     h4f5b6c9_16  conda-forge         
gcc_impl_linux-64              9.3.0     ha2fd2e4_14  conda-forge         
gcc_impl_linux-64              9.3.0     ha2fd2e4_15  conda-forge         
gcc_impl_linux-64              9.3.0     ha2fd2e4_16  conda-forge         
gcc_impl_linux-64              9.3.0     hda68d29_11  conda-forge         
gcc_impl_linux-64              9.3.0     hda68d29_12  conda-forge         
gcc_impl_linux-64              9.3.0     hda68d29_13  conda-forge

When you specify gcc_impl_linux-64=7.5.0 at the command line, it works correctly.

Note that builds past 13 have extra and more complicated deps due to the cross-compiling PRs.

gcc_impl_linux-64-7.3.0-hd420e75_4.tar.bz2 ['libgcc-ng 5.4.*|7.2.*|7.3.*|8.2.*|9.1.*|9.2.*', 'libstdcxx-ng 5.4.*|7.2.*|7.3.*|8.2.*|9.1.*|9.2.*', 'libgfortran 5.4.*|7.2.*|7.3.*|8.2.*|9.1.*|9.2.*', 'libgomp 5.4.*|7.2.*|7.3.*|8.2.*|9.1.*|9.2.*', 'binutils_impl_linux-64 <2.34', 'ld_impl_linux-64 <2.34', 'sysroot_linux-64 ==99999999999'] ['binutils_impl_linux-64 >=2.31.1', 'libgcc-ng >=7.3.0', 'libgomp >=7.3.0', 'libstdcxx-ng >=7.3.0']
gcc_impl_linux-64-7.3.0-hd420e75_5.tar.bz2 ['libgcc-ng 5.4.*|7.2.*|7.3.*|8.2.*|9.1.*|9.2.*', 'libstdcxx-ng 5.4.*|7.2.*|7.3.*|8.2.*|9.1.*|9.2.*', 'libgfortran 5.4.*|7.2.*|7.3.*|8.2.*|9.1.*|9.2.*', 'libgomp 5.4.*|7.2.*|7.3.*|8.2.*|9.1.*|9.2.*', 'binutils_impl_linux-64 <2.34', 'ld_impl_linux-64 <2.34', 'sysroot_linux-64 ==99999999999'] ['binutils_impl_linux-64 >=2.31.1', 'libgcc-ng >=7.3.0', 'libgomp >=7.3.0', 'libstdcxx-ng >=7.3.0']
gcc_impl_linux-64-7.5.0-hda68d29_10.tar.bz2 None ['binutils_impl_linux-64 >=2.31.1', 'libgcc-ng >=7.5.0', 'libgomp >=7.5.0', 'libstdcxx-ng >=7.5.0', 'sysroot_linux-64']
gcc_impl_linux-64-7.5.0-hda68d29_11.tar.bz2 None ['binutils_impl_linux-64 >=2.31.1', 'libgcc-ng >=7.5.0', 'libgomp >=7.5.0', 'libstdcxx-ng >=7.5.0', 'sysroot_linux-64']
gcc_impl_linux-64-7.5.0-hda68d29_12.tar.bz2 None ['binutils_impl_linux-64 >=2.31.1', 'libgcc-ng >=7.5.0', 'libgomp >=7.5.0', 'libstdcxx-ng >=7.5.0', 'sysroot_linux-64']
gcc_impl_linux-64-7.5.0-hda68d29_13.tar.bz2 None ['binutils_impl_linux-64 >=2.31.1', 'libgcc-ng >=7.5.0', 'libgomp >=7.5.0', 'libstdcxx-ng >=7.5.0', 'sysroot_linux-64']
gcc_impl_linux-64-7.5.0-hdb87b24_14.tar.bz2 None ['binutils_impl_linux-64 >=2.31.1', 'libgcc-devel_linux-64 7.5.0 h42c25f5_14', 'libgcc-ng >=4.9', 'libgcc-ng >=7.5.0', 'libgomp >=7.5.0', 'libstdcxx-ng >=4.9', 'libstdcxx-ng >=7.5.0', 'sysroot_linux-64']
gcc_impl_linux-64-7.5.0-hdb87b24_15.tar.bz2 None ['binutils_impl_linux-64 >=2.31.1', 'libgcc-devel_linux-64 7.5.0 h42c25f5_15', 'libgcc-ng >=4.9', 'libgcc-ng >=7.5.0', 'libgomp >=7.5.0', 'libstdcxx-ng >=4.9', 'libstdcxx-ng >=7.5.0', 'sysroot_linux-64']
gcc_impl_linux-64-7.5.0-hdb87b24_16.tar.bz2 None ['binutils_impl_linux-64 >=2.31.1', 'libgcc-devel_linux-64 7.5.0 h42c25f5_16', 'libgcc-ng >=4.9', 'libgcc-ng >=7.5.0', 'libgomp >=7.5.0', 'libstdcxx-ng >=4.9', 'libstdcxx-ng >=7.5.0', 'sysroot_linux-64']
gcc_impl_linux-64-8.4.0-h4f5b6c9_14.tar.bz2 None ['binutils_impl_linux-64 >=2.31.1', 'libgcc-devel_linux-64 8.4.0 h3b9816e_14', 'libgcc-ng >=4.9', 'libgcc-ng >=8.4.0', 'libgomp >=8.4.0', 'libstdcxx-ng >=4.9', 'libstdcxx-ng >=8.4.0', 'sysroot_linux-64']
gcc_impl_linux-64-8.4.0-h4f5b6c9_15.tar.bz2 None ['binutils_impl_linux-64 >=2.31.1', 'libgcc-devel_linux-64 8.4.0 h3b9816e_15', 'libgcc-ng >=4.9', 'libgcc-ng >=8.4.0', 'libgomp >=8.4.0', 'libstdcxx-ng >=4.9', 'libstdcxx-ng >=8.4.0', 'sysroot_linux-64']
gcc_impl_linux-64-8.4.0-h4f5b6c9_16.tar.bz2 None ['binutils_impl_linux-64 >=2.31.1', 'libgcc-devel_linux-64 8.4.0 h3b9816e_16', 'libgcc-ng >=4.9', 'libgcc-ng >=8.4.0', 'libgomp >=8.4.0', 'libstdcxx-ng >=4.9', 'libstdcxx-ng >=8.4.0', 'sysroot_linux-64']
gcc_impl_linux-64-9.3.0-ha2fd2e4_14.tar.bz2 None ['binutils_impl_linux-64 >=2.31.1', 'libgcc-devel_linux-64 9.3.0 hfd08b2a_14', 'libgcc-ng >=4.9', 'libgcc-ng >=9.3.0', 'libgomp >=9.3.0', 'libstdcxx-ng >=4.9', 'libstdcxx-ng >=9.3.0', 'sysroot_linux-64']
gcc_impl_linux-64-9.3.0-ha2fd2e4_15.tar.bz2 None ['binutils_impl_linux-64 >=2.31.1', 'libgcc-devel_linux-64 9.3.0 hfd08b2a_15', 'libgcc-ng >=4.9', 'libgcc-ng >=9.3.0', 'libgomp >=9.3.0', 'libstdcxx-ng >=4.9', 'libstdcxx-ng >=9.3.0', 'sysroot_linux-64']
gcc_impl_linux-64-9.3.0-ha2fd2e4_16.tar.bz2 None ['binutils_impl_linux-64 >=2.31.1', 'libgcc-devel_linux-64 9.3.0 hfd08b2a_16', 'libgcc-ng >=4.9', 'libgcc-ng >=9.3.0', 'libgomp >=9.3.0', 'libstdcxx-ng >=4.9', 'libstdcxx-ng >=9.3.0', 'sysroot_linux-64']
gcc_impl_linux-64-9.3.0-hda68d29_11.tar.bz2 None ['binutils_impl_linux-64 >=2.31.1', 'libgcc-ng >=9.3.0', 'libgomp >=9.3.0', 'libstdcxx-ng >=9.3.0', 'sysroot_linux-64']

The columns here are the package, constrains and depends.

Environment (conda list):

$ conda list
(base) root@53232016349f:/# conda list
# packages in environment at /opt/conda:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       0_gnu    conda-forge
backports                 1.0                        py_2    conda-forge
backports.functools_lru_cache 1.6.1                      py_0    conda-forge
bzip2                     1.0.8                h516909a_2    conda-forge
c-ares                    1.16.1               h516909a_3    conda-forge
ca-certificates           2020.6.20            hecda079_0    conda-forge
certifi                   2020.6.20        py37hc8dfbb8_0    conda-forge
cffi                      1.13.2           py37h8022711_0    conda-forge
chardet                   3.0.4                 py37_1003    conda-forge
conda                     4.8.4            py37hc8dfbb8_2    conda-forge
conda-package-handling    1.6.0            py37h516909a_1    conda-forge
cryptography              2.8              py37h72c5cf5_1    conda-forge
decorator                 4.4.2                      py_0    conda-forge
icu                       64.2                 he1b5a44_1    conda-forge
idna                      2.8                   py37_1000    conda-forge
ipython                   5.8.0                    py37_1    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
krb5                      1.17.1               hfafb76e_3    conda-forge
ld_impl_linux-64          2.33.1               h53a641e_8    conda-forge
libarchive                3.3.3             hc3f970e_1004    conda-forge
libcurl                   7.71.1               hcdd3856_5    conda-forge
libedit                   3.1.20191231         h46ee950_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libffi                    3.2.1             he1b5a44_1006    conda-forge
libgcc-ng                 9.2.0                h24d8f2e_2    conda-forge
libgomp                   9.2.0                h24d8f2e_2    conda-forge
libiconv                  1.16                 h516909a_0    conda-forge
libnghttp2                1.41.0               h8cfc5f6_2    conda-forge
libsolv                   0.7.14               h8b12597_5    conda-forge
libssh2                   1.9.0                hab1572f_5    conda-forge
libstdcxx-ng              9.2.0                hdf63c60_2    conda-forge
libxml2                   2.9.10               hee79883_0    conda-forge
lz4-c                     1.8.3             he1b5a44_1001    conda-forge
lzo                       2.10              h516909a_1000    conda-forge
mamba                     0.5.1            py37h782c684_0    conda-forge
ncurses                   6.1               hf484d3e_1002    conda-forge
openssl                   1.1.1g               h516909a_1    conda-forge
pexpect                   4.8.0            py37hc8dfbb8_1    conda-forge
pickleshare               0.7.5           py37hc8dfbb8_1001    conda-forge
pip                       20.0.2                     py_2    conda-forge
prompt_toolkit            1.0.15                     py_1    conda-forge
ptyprocess                0.6.0                   py_1001    conda-forge
pycosat                   0.6.3           py37h516909a_1002    conda-forge
pycparser                 2.19                     py37_1    conda-forge
pygments                  2.6.1                      py_0    conda-forge
pyopenssl                 19.1.0                   py37_0    conda-forge
pysocks                   1.7.1                    py37_0    conda-forge
python                    3.7.6                h357f687_2    conda-forge
python_abi                3.7                     1_cp37m    conda-forge
rapidjson                 1.1.0             he1b5a44_1002    conda-forge
readline                  8.0                  hf8c457e_0    conda-forge
requests                  2.22.0                   py37_1    conda-forge
ruamel_yaml               0.15.80         py37h516909a_1000    conda-forge
setuptools                45.2.0                   py37_0    conda-forge
simplegeneric             0.8.1                      py_1    conda-forge
six                       1.14.0                   py37_0    conda-forge
sqlite                    3.30.1               hcee41ef_0    conda-forge
tk                        8.6.10               hed695b0_0    conda-forge
tqdm                      4.42.1                     py_0    conda-forge
traitlets                 5.0.4                      py_0    conda-forge
urllib3                   1.25.7                   py37_0    conda-forge
wcwidth                   0.2.5              pyh9f0ad1d_1    conda-forge
wheel                     0.34.2                     py_1    conda-forge
xz                        5.2.4             h14c3975_1001    conda-forge
yaml                      0.2.2                h516909a_1    conda-forge
zlib                      1.2.11            h516909a_1006    conda-forge
zstd                      1.3.3                         1    conda-forge

Details about conda and system ( conda info ):

$ conda info
(base) root@53232016349f:/# conda info

     active environment : base
    active env location : /opt/conda
            shell level : 1
       user config file : /root/.condarc
 populated config files : /opt/conda/.condarc
          conda version : 4.8.4
    conda-build version : not installed
         python version : 3.7.6.final.0
       virtual packages : __glibc=2.27
       base environment : /opt/conda  (writable)
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
          package cache : /opt/conda/pkgs
                          /root/.conda/pkgs
       envs directories : /opt/conda/envs
                          /root/.conda/envs
               platform : linux-64
             user-agent : conda/4.8.4 requests/2.22.0 CPython/3.7.6 Linux/4.19.76-linuxkit ubuntu/18.04.5 glibc/2.27
                UID:GID : 0:0
             netrc file : None
           offline mode : False

The text was updated successfully, but these errors were encountered:

beckermr · 2020-09-10T20:27:40Z

cc @jjhelmus @leofang @isuruf

beckermr · 2020-09-10T20:47:55Z

Note that mamba seems to come to a different solution

(base) root@53232016349f:/# mamba create -n mpi_test2 -c conda-forge python=3.7 openmpi openmpi-mpicc

                  __    __    __    __
                 /  \  /  \  /  \  /  \
                /    \/    \/    \/    \
███████████████/  /██/  /██/  /██/  /████████████████████████
              /  / \   / \   / \   / \  \____
             /  /   \_/   \_/   \_/   \    o \__,
            / _/                       \_____/  `
            |/
        ███╗   ███╗ █████╗ ███╗   ███╗██████╗  █████╗
        ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗
        ██╔████╔██║███████║██╔████╔██║██████╔╝███████║
        ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║
        ██║ ╚═╝ ██║██║  ██║██║ ╚═╝ ██║██████╔╝██║  ██║
        ╚═╝     ╚═╝╚═╝  ╚═╝╚═╝     ╚═╝╚═════╝ ╚═╝  ╚═╝

        mamba (0.5.1) supported by @QuantStack

        GitHub:  https://github.com/TheSnakePit/mamba
        Twitter: https://twitter.com/QuantStack

█████████████████████████████████████████████████████████████

conda-forge/noarch       [====================] (00m:01s) Done
conda-forge/linux-64     [====================] (00m:02s) Done

Looking for: ['python=3.7', 'openmpi', 'openmpi-mpicc']

Transaction

  Prefix: /opt/conda/envs/mpi_test2

  Updating specs:

   - python==3.7
   - openmpi
   - openmpi-mpicc


  Package                    Version  Build               Channel                    Size
───────────────────────────────────────────────────────────────────────────────────────────
  Install:
───────────────────────────────────────────────────────────────────────────────────────────

  _libgcc_mutex                  0.1  conda_forge         conda-forge/linux-64       3 KB
  _openmp_mutex                  4.5  1_gnu               conda-forge/linux-64      22 KB
  binutils_impl_linux-64        2.34  h2122c62_9          conda-forge/linux-64       9 MB
  binutils_linux-64             2.34  h47ac705_27         conda-forge/linux-64      22 KB
  ca-certificates          2020.6.20  hecda079_0          conda-forge/linux-64     Cached
  certifi                  2020.6.20  py37hc8dfbb8_0      conda-forge/linux-64     Cached
  gcc_impl_linux-64            7.5.0  hdb87b24_16         conda-forge/linux-64      38 MB
  gcc_linux-64                 7.5.0  hf34d7eb_27         conda-forge/linux-64      23 KB
  kernel-headers_linux-64     2.6.32  h77966d4_13         conda-forge/noarch       707 KB
  ld_impl_linux-64              2.34  hc38a660_9          conda-forge/linux-64     612 KB
  libffi                       3.2.1  he1b5a44_1007       conda-forge/linux-64      47 KB
  libgcc-devel_linux-64        7.5.0  h42c25f5_16         conda-forge/linux-64       4 MB
  libgcc-ng                    9.3.0  h24d8f2e_16         conda-forge/linux-64       8 MB
  libgfortran-ng               7.5.0  hdf63c60_16         conda-forge/linux-64       1 MB
  libgomp                      9.3.0  h24d8f2e_16         conda-forge/linux-64     378 KB
  libstdcxx-ng                 9.3.0  hdf63c60_16         conda-forge/linux-64       4 MB
  mpi                            1.0  openmpi             conda-forge/linux-64       4 KB
  ncurses                        6.2  he1b5a44_1          conda-forge/linux-64     993 KB
  openmpi                      4.0.5  hdf1f1ad_1          conda-forge/linux-64       4 MB
  openmpi-mpicc                4.0.5  h516909a_1          conda-forge/linux-64       8 KB
  openssl                     1.1.1g  h516909a_1          conda-forge/linux-64     Cached
  pip                         20.2.3  py_0                conda-forge/noarch         1 MB
  python                       3.7.8  h425cb1d_1_cpython  conda-forge/linux-64      53 MB
  python_abi                     3.7  1_cp37m             conda-forge/linux-64     Cached
  readline                       8.0  he28a2e2_2          conda-forge/linux-64     281 KB
  setuptools                  49.6.0  py37hc8dfbb8_0      conda-forge/linux-64     948 KB
  sqlite                      3.33.0  h4cf870e_0          conda-forge/linux-64       1 MB
  sysroot_linux-64              2.12  h77966d4_13         conda-forge/noarch        30 MB
  tk                          8.6.10  hed695b0_0          conda-forge/linux-64       3 MB
  wheel                       0.35.1  pyh9f0ad1d_0        conda-forge/noarch        29 KB
  xz                           5.2.5  h516909a_1          conda-forge/linux-64     343 KB
  zlib                        1.2.11  h516909a_1009       conda-forge/linux-64     106 KB

  Summary:

  Install: 32 packages

  Total download: 162 MB

───────────────────────────────────────────────────────────────────────────────────────────

Confirm changes: [Y/n]

I think this is because mamba always maximizes build number ahead of other things? @wolfv any comments here?

beckermr · 2020-09-11T17:15:06Z

A workaround for this issue is to use strict channel priority.

beckermr · 2020-09-11T17:50:33Z

strict channel priority does not appear to solve this issue

(base) root@1b942bcdbb53:/# conda config --show
add_anaconda_token: True
add_pip_as_python_dependency: True
aggressive_update_packages:
  - ca-certificates
  - certifi
  - openssl
allow_conda_downgrades: False
allow_cycles: True
allow_non_channel_urls: False
allow_softlinks: False
always_copy: False
always_softlink: False
always_yes: None
anaconda_upload: None
auto_activate_base: True
auto_stack: 0
auto_update_conda: True
bld_path: 
changeps1: True
channel_alias: https://conda.anaconda.org
channel_priority: strict
channels:
  - https://conda.anaconda.org/conda-forge
client_ssl_cert: None
client_ssl_cert_key: None
clobber: False
conda_build: {}
create_default_packages: []
croot: /opt/conda/conda-bld
custom_channels:
  pkgs/main: https://repo.anaconda.com
  pkgs/r: https://repo.anaconda.com
  pkgs/pro: https://repo.anaconda.com
custom_multichannels:
  defaults: 
    - https://repo.anaconda.com/pkgs/main
    - https://repo.anaconda.com/pkgs/r
  local: 
debug: False
default_channels:
  - https://repo.anaconda.com/pkgs/main
  - https://repo.anaconda.com/pkgs/r
default_python: 3.7
default_threads: None
deps_modifier: not_set
dev: False
disallowed_packages: []
download_only: False
dry_run: False
enable_private_envs: False
env_prompt: ({default_env}) 
envs_dirs:
  - /opt/conda/envs
  - /root/.conda/envs
error_upload_url: https://conda.io/conda-post/unexpected-error
execute_threads: 1
extra_safety_checks: False
force: False
force_32bit: False
force_reinstall: False
force_remove: False
ignore_pinned: False
json: False
local_repodata_ttl: 1
migrated_channel_aliases: []
migrated_custom_channels: {}
non_admin_enabled: True
notify_outdated_conda: True
offline: False
override_channels_enabled: True
path_conflict: clobber
pinned_packages: []
pip_interop_enabled: False
pkgs_dirs:
  - /opt/conda/pkgs
  - /root/.conda/pkgs
proxy_servers: {}
quiet: False
remote_backoff_factor: 1
remote_connect_timeout_secs: 9.15
remote_max_retries: 3
remote_read_timeout_secs: 60.0
repodata_fns:
  - current_repodata.json
  - repodata.json
repodata_threads: None
report_errors: None
restore_free_channel: False
rollback_enabled: True
root_prefix: /opt/conda
safety_checks: warn
sat_solver: pycosat
separate_format_cache: False
shortcuts: True
show_channel_urls: None
solver_ignore_timestamps: False
ssl_verify: True
subdir: linux-64
subdirs:
  - linux-64
  - noarch
target_prefix_override: 
track_features: []
unsatisfiable_hints: True
unsatisfiable_hints_check_depth: 2
update_modifier: update_specs
use_index_cache: False
use_local: False
use_only_tar_bz2: False
verbosity: 0
verify_threads: 1
whitelist_channels: []
(base) root@1b942bcdbb53:/# conda create -n mpi_test2 -c conda-forge python=3.7 openmpi openmpi-mpicc
Collecting package metadata (current_repodata.json): done
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: done

## Package Plan ##

  environment location: /opt/conda/envs/mpi_test2

  added / updated specs:
    - openmpi
    - openmpi-mpicc
    - python=3.7


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    _libgcc_mutex-0.1          |      conda_forge           3 KB  conda-forge
    _openmp_mutex-4.5          |            1_gnu          22 KB  conda-forge
    binutils_impl_linux-64-2.34|       h2122c62_9         9.2 MB  conda-forge
    binutils_linux-64-2.34     |      h47ac705_27          22 KB  conda-forge
    gcc_impl_linux-64-7.5.0    |      hda68d29_13        42.7 MB  conda-forge
    gcc_linux-64-7.5.0         |      hf34d7eb_27          23 KB  conda-forge
    kernel-headers_linux-64-2.6.32|      h77966d4_13         707 KB  conda-forge
    ld_impl_linux-64-2.34      |       hc38a660_9         612 KB  conda-forge
    libffi-3.2.1               |    he1b5a44_1007          47 KB  conda-forge
    libgcc-ng-9.3.0            |      h24d8f2e_16         7.8 MB  conda-forge
    libgfortran-ng-7.5.0       |      hdf63c60_16         1.3 MB  conda-forge
    libgomp-9.3.0              |      h24d8f2e_16         378 KB  conda-forge
    libstdcxx-ng-9.3.0         |      hdf63c60_16         4.0 MB  conda-forge
    mpi-1.0                    |          openmpi           4 KB  conda-forge
    openmpi-4.0.5              |       hdf1f1ad_1         3.9 MB  conda-forge
    openmpi-mpicc-4.0.5        |       h516909a_1           8 KB  conda-forge
    pip-20.2.3                 |             py_0         1.1 MB  conda-forge
    python-3.7.8               |h6f2ec95_1_cpython        53.1 MB  conda-forge
    readline-8.0               |       he28a2e2_2         281 KB  conda-forge
    setuptools-49.6.0          |   py37hc8dfbb8_0         948 KB  conda-forge
    sysroot_linux-64-2.12      |      h77966d4_13        30.2 MB  conda-forge
    tk-8.6.10                  |       hed695b0_0         3.2 MB  conda-forge
    wheel-0.35.1               |     pyh9f0ad1d_0          29 KB  conda-forge
    zlib-1.2.11                |    h516909a_1009         106 KB  conda-forge
    ------------------------------------------------------------
                                           Total:       159.7 MB

The following NEW packages will be INSTALLED:

  _libgcc_mutex      conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
  _openmp_mutex      conda-forge/linux-64::_openmp_mutex-4.5-1_gnu
  binutils_impl_lin~ conda-forge/linux-64::binutils_impl_linux-64-2.34-h2122c62_9
  binutils_linux-64  conda-forge/linux-64::binutils_linux-64-2.34-h47ac705_27
  ca-certificates    conda-forge/linux-64::ca-certificates-2020.6.20-hecda079_0
  certifi            conda-forge/linux-64::certifi-2020.6.20-py37hc8dfbb8_0
  gcc_impl_linux-64  conda-forge/linux-64::gcc_impl_linux-64-7.5.0-hda68d29_13
  gcc_linux-64       conda-forge/linux-64::gcc_linux-64-7.5.0-hf34d7eb_27
  kernel-headers_li~ conda-forge/noarch::kernel-headers_linux-64-2.6.32-h77966d4_13
  ld_impl_linux-64   conda-forge/linux-64::ld_impl_linux-64-2.34-hc38a660_9
  libffi             conda-forge/linux-64::libffi-3.2.1-he1b5a44_1007
  libgcc-ng          conda-forge/linux-64::libgcc-ng-9.3.0-h24d8f2e_16
  libgfortran-ng     conda-forge/linux-64::libgfortran-ng-7.5.0-hdf63c60_16
  libgomp            conda-forge/linux-64::libgomp-9.3.0-h24d8f2e_16
  libstdcxx-ng       conda-forge/linux-64::libstdcxx-ng-9.3.0-hdf63c60_16
  mpi                conda-forge/linux-64::mpi-1.0-openmpi
  ncurses            conda-forge/linux-64::ncurses-6.2-he1b5a44_1
  openmpi            conda-forge/linux-64::openmpi-4.0.5-hdf1f1ad_1
  openmpi-mpicc      conda-forge/linux-64::openmpi-mpicc-4.0.5-h516909a_1
  openssl            conda-forge/linux-64::openssl-1.1.1g-h516909a_1
  pip                conda-forge/noarch::pip-20.2.3-py_0
  python             conda-forge/linux-64::python-3.7.8-h6f2ec95_1_cpython
  python_abi         conda-forge/linux-64::python_abi-3.7-1_cp37m
  readline           conda-forge/linux-64::readline-8.0-he28a2e2_2
  setuptools         conda-forge/linux-64::setuptools-49.6.0-py37hc8dfbb8_0
  sqlite             conda-forge/linux-64::sqlite-3.33.0-h4cf870e_0
  sysroot_linux-64   conda-forge/noarch::sysroot_linux-64-2.12-h77966d4_13
  tk                 conda-forge/linux-64::tk-8.6.10-hed695b0_0
  wheel              conda-forge/noarch::wheel-0.35.1-pyh9f0ad1d_0
  xz                 conda-forge/linux-64::xz-5.2.5-h516909a_1
  zlib               conda-forge/linux-64::zlib-1.2.11-h516909a_1009


Proceed ([y]/n)?

in otherwords, the offending builds are ours.

cc @isuruf

wolfv · 2020-09-11T17:52:38Z

yep, mamba always prefers higher build numbers if there is no conflict.

isuruf · 2020-09-11T17:53:53Z

@beckermr, you are talking about a different issue than @leofang who was talking about pulling in a gcc build with the old sysroot.

beckermr · 2020-09-11T17:54:35Z

Ahhhhhhh! Thank you @isuruf!

isuruf · 2020-09-11T17:55:15Z

To reproduce @leofang's issue, you need to add defaults and then have flexible channel priority

beckermr · 2020-09-11T17:56:02Z

Right. I do think the separate issue here matters though. Any thoughts?

isuruf · 2020-09-11T17:57:18Z

I agree, but that's not the most pressing issue right now.

beckermr · 2020-09-11T18:00:19Z

Sure. I am not in a rush either. I just wanted to make sure this issue should remain open.

leofang mentioned this issue Sep 11, 2020

openmpi-mpicc regression on path to underlying compiler in 4.0.5 conda-forge/openmpi-feedstock#61

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solver not pulling latest build #44

solver not pulling latest build #44

beckermr commented Sep 10, 2020 •

edited

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beckermr commented Sep 11, 2020

beckermr commented Sep 11, 2020

wolfv commented Sep 11, 2020

isuruf commented Sep 11, 2020

beckermr commented Sep 11, 2020

isuruf commented Sep 11, 2020

beckermr commented Sep 11, 2020

isuruf commented Sep 11, 2020

beckermr commented Sep 11, 2020

solver not pulling latest build #44

solver not pulling latest build #44

Comments

beckermr commented Sep 10, 2020 • edited

beckermr commented Sep 10, 2020

beckermr commented Sep 10, 2020

beckermr commented Sep 11, 2020

beckermr commented Sep 11, 2020

wolfv commented Sep 11, 2020

isuruf commented Sep 11, 2020

beckermr commented Sep 11, 2020

isuruf commented Sep 11, 2020

beckermr commented Sep 11, 2020

isuruf commented Sep 11, 2020

beckermr commented Sep 11, 2020

beckermr commented Sep 10, 2020 •

edited