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I am encountering an issue with CodeQL version 2.17 when using the new --build-mode=none option for Java on CentOS Linux 7 (Core). Despite specifying this option in the codeql database create command, the autobuild script is still executed, resulting in the project being built. Are there any workarounds to make this work?
When specifying the --build-mode=none option, I expect the autobuild script not to be executed and the project not to be built. I am trying to optimize the speed of the database creation.
Actual Behavior
Despite using the --build-mode=none option, the autobuild script is still executed, and the project is being built. This can be observed in the logs, where the Maven build process is initiated and dependencies are downloaded.
Environment
Operating System: CentOS Linux 7 (Core)
Environment: SLURM Job, Stanford Sherlock
CodeQL Version:
[abaveja@sh03-ln08 login /home/groups/azalia/amrit]$ ./codeql/codeql --version
CodeQL command-line toolchain release 2.17.0.
Copyright (C) 2019-2024 GitHub, Inc.
Unpacked in: /home/groups/azalia/amrit/codeql
Analysis results depend critically on separately distributed query and
extractor modules. To list modules that are visible to the toolchain,
use 'codeql resolve qlpacks' and 'codeql resolve languages'.
(base) [abaveja@sh02-01n58 /home/groups/azalia/amrit]$ codeql database create foo --no-skip-empty --build-mode=none -l java --source-root commons-cli -v
Writing logs to /home/groups/azalia/amrit/foo/log/database-create-20240412.153625.848.log.
Initializing database at /home/groups/azalia/amrit/foo.
Calculating baseline information in /home/groups/azalia/amrit/commons-cli
Running command in /home/groups/azalia/amrit/commons-cli: [/home/groups/azalia/amrit/codeql/javascript/tools/configure-baseline.sh]
Calculated baseline information for languages: java, javascript (220ms).
Resolving extractor java.
Successfully loaded extractor Java/Kotlin (java) from /home/groups/azalia/amrit/codeql/java.
Created skeleton CodeQL database at /home/groups/azalia/amrit/foo. This in-progress database is ready to be populated by an extractor.
Detected autobuild command for Java/Kotlin: /home/groups/azalia/amrit/codeql/java/tools/autobuild.sh.
Running build command: [/home/groups/azalia/amrit/codeql/java/tools/autobuild.sh]
Running command in /home/groups/azalia/amrit/commons-cli: [/home/groups/azalia/amrit/codeql/java/tools/autobuild.sh]
[2024-04-12 15:36:28] [build-stdout] [2024-04-12 15:36:28] Extracting Java with build-mode=none.
[2024-04-12 15:36:28] [build-stdout] [2024-04-12 15:36:28] Found usable build tool Maven.
[2024-04-12 15:36:28] [build-stdout] [2024-04-12 15:36:28] Trying to infer the JDK to use to extract Java.
[2024-04-12 15:36:28] [build-stdout] [2024-04-12 15:36:28] Found no Java toolchains in a toolchains file, inspecting environment variables...
[2024-04-12 15:36:28] [build-stdout] [2024-04-12 15:36:28] Checking if a build tool can recommend a classpath to resolve external dependencies.
[2024-04-12 15:36:28] [build-stdout] [2024-04-12 15:36:28] Build directory is .
[2024-04-12 15:36:29] [build-stdout] [2024-04-12 15:36:29] [autobuild] Apache Maven 3.8.1 (05c21c65bdfed0f71a2f2ada8b84da59348c4c5d)
[2024-04-12 15:36:29] [build-stdout] [2024-04-12 15:36:29] [autobuild] Maven home: /home/groups/azalia/amrit/mc/opt/maven
[2024-04-12 15:36:29] [build-stdout] [2024-04-12 15:36:29] [autobuild] Java version: 11.0.13, vendor: JetBrains s.r.o., runtime: /home/groups/azalia/amrit/mc
[2024-04-12 15:36:29] [build-stdout] [2024-04-12 15:36:29] [autobuild] Default locale: en_US, platform encoding: UTF-8
[2024-04-12 15:36:29] [build-stdout] [2024-04-12 15:36:29] [autobuild] OS name: "linux", version: "3.10.0-1160.108.1.el7.x86_64", arch: "amd64", family: "unix"
[2024-04-12 15:36:31] [build-stdout] [2024-04-12 15:36:31] [autobuild] [INFO] Error stacktraces are turned on.
[2024-04-12 15:36:31] [build-stdout] [2024-04-12 15:36:31] [autobuild] [INFO] Scanning for projects...
[2024-04-12 15:36:33] [build-stdout] [2024-04-12 15:36:33] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-parent/69/commons-parent-69.pom
[2024-04-12 15:36:33] [build-stdout] [2024-04-12 15:36:33] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/commons/commons-parent/69/commons-parent-69.pom (77 kB at 103 kB/s)
[2024-04-12 15:36:33] [build-stdout] [2024-04-12 15:36:33] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/org/apache/apache/31/apache-31.pom
[2024-04-12 15:36:33] [build-stdout] [2024-04-12 15:36:33] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/apache/31/apache-31.pom (24 kB at 336 kB/s)
[2024-04-12 15:36:34] [build-stdout] [2024-04-12 15:36:34] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/org/junit/junit-bom/5.10.2/junit-bom-5.10.2.pom
[2024-04-12 15:36:34] [build-stdout] [2024-04-12 15:36:34] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/org/junit/junit-bom/5.10.2/junit-bom-5.10.2.pom (5.6 kB at 88 kB/s)
[2024-04-12 15:36:34] [build-stdout] [2024-04-12 15:36:34] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/com/github/ferstl/depgraph-maven-plugin/4.0.2/depgraph-maven-plugin-4.0.2.pom
[2024-04-12 15:36:34] [build-stdout] [2024-04-12 15:36:34] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/com/github/ferstl/depgraph-maven-plugin/4.0.2/depgraph-maven-plugin-4.0.2.pom (17 kB at 219 kB/s)
[2024-04-12 15:36:34] [build-stdout] [2024-04-12 15:36:34] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/org/junit/junit-bom/5.7.0/junit-bom-5.7.0.pom
[2024-04-12 15:36:34] [build-stdout] [2024-04-12 15:36:34] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/org/junit/junit-bom/5.7.0/junit-bom-5.7.0.pom (5.1 kB at 104 kB/s)
[2024-04-12 15:36:34] [build-stdout] [2024-04-12 15:36:34] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/com/github/ferstl/depgraph-maven-plugin/4.0.2/depgraph-maven-plugin-4.0.2.jar
[2024-04-12 15:36:34] [build-stdout] [2024-04-12 15:36:34] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/com/github/ferstl/depgraph-maven-plugin/4.0.2/depgraph-maven-plugin-4.0.2.jar (148 kB at 2.4 MB/s)
[2024-04-12 15:36:34] [build-stdout] [2024-04-12 15:36:34] [autobuild] [INFO]
[2024-04-12 15:36:34] [build-stdout] [2024-04-12 15:36:34] [autobuild] [INFO] ----------------------< commons-cli:commons-cli >-----------------------
[2024-04-12 15:36:34] [build-stdout] [2024-04-12 15:36:34] [autobuild] [INFO] Building Apache Commons CLI 1.7.0-SNAPSHOT
[2024-04-12 15:36:34] [build-stdout] [2024-04-12 15:36:34] [autobuild] [INFO] --------------------------------[ jar ]---------------------------------
[2024-04-12 15:36:34] [build-stdout] [2024-04-12 15:36:34] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/org/junit/jupiter/junit-jupiter-api/5.10.2/junit-jupiter-api-5.10.2.pom
[2024-04-12 15:36:34] [build-stdout] [2024-04-12 15:36:34] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/org/junit/jupiter/junit-jupiter-api/5.10.2/junit-jupiter-api-5.10.2.pom (3.2 kB at 55 kB/s)
[2024-04-12 15:36:34] [build-stdout] [2024-04-12 15:36:34] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/org/opentest4j/opentest4j/1.3.0/opentest4j-1.3.0.pom
[2024-04-12 15:36:34] [build-stdout] [2024-04-12 15:36:34] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/org/opentest4j/opentest4j/1.3.0/opentest4j-1.3.0.pom (2.0 kB at 38 kB/s)
[2024-04-12 15:36:34] [build-stdout] [2024-04-12 15:36:34] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/org/junit/platform/junit-platform-commons/1.10.2/junit-platform-commons-1.10.2.pom
[2024-04-12 15:36:34] [build-stdout] [2024-04-12 15:36:34] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/org/junit/platform/junit-platform-commons/1.10.2/junit-platform-commons-1.10.2.pom (2.8 kB at 51 kB/s)
[2024-04-12 15:36:34] [build-stdout] [2024-04-12 15:36:34] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/org/apiguardian/apiguardian-api/1.1.2/apiguardian-api-1.1.2.pom
[2024-04-12 15:36:34] [build-stdout] [2024-04-12 15:36:34] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/org/apiguardian/apiguardian-api/1.1.2/apiguardian-api-1.1.2.pom (1.5 kB at 28 kB/s)
[2024-04-12 15:36:34] [build-stdout] [2024-04-12 15:36:34] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/org/junit/jupiter/junit-jupiter-engine/5.10.2/junit-jupiter-engine-5.10.2.pom
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/org/junit/jupiter/junit-jupiter-engine/5.10.2/junit-jupiter-engine-5.10.2.pom (3.2 kB at 42 kB/s)
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/org/junit/platform/junit-platform-engine/1.10.2/junit-platform-engine-1.10.2.pom
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/org/junit/platform/junit-platform-engine/1.10.2/junit-platform-engine-1.10.2.pom (3.2 kB at 53 kB/s)
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/org/junit/jupiter/junit-jupiter-params/5.10.2/junit-jupiter-params-5.10.2.pom
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/org/junit/jupiter/junit-jupiter-params/5.10.2/junit-jupiter-params-5.10.2.pom (3.0 kB at 48 kB/s)
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/commons-io/commons-io/2.16.1/commons-io-2.16.1.pom
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/commons-io/commons-io/2.16.1/commons-io-2.16.1.pom (20 kB at 322 kB/s)
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO]
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] --- depgraph-maven-plugin:4.0.2:graph (default-cli) @ commons-cli ---
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.11.0/jackson-databind-2.11.0.pom
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.11.0/jackson-databind-2.11.0.pom (7.4 kB at 121 kB/s)
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/jackson-base/2.11.0/jackson-base-2.11.0.pom
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/jackson-base/2.11.0/jackson-base-2.11.0.pom (7.4 kB at 140 kB/s)
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/jackson-bom/2.11.0/jackson-bom-2.11.0.pom
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/jackson-bom/2.11.0/jackson-bom-2.11.0.pom (13 kB at 255 kB/s)
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/jackson-parent/2.11/jackson-parent-2.11.pom
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/jackson-parent/2.11/jackson-parent-2.11.pom (7.8 kB at 165 kB/s)
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/oss-parent/38/oss-parent-38.pom
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/oss-parent/38/oss-parent-38.pom (23 kB at 452 kB/s)
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.11.0/jackson-annotations-2.11.0.pom
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.11.0/jackson-annotations-2.11.0.pom (3.5 kB at 72 kB/s)
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-core/2.11.0/jackson-core-2.11.0.pom
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-core/2.11.0/jackson-core-2.11.0.pom (4.9 kB at 84 kB/s)
[2024-04-12 15:36:35] [build-stdout] [2024-04-12 15:36:35] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/29.0-jre/guava-29.0-jre.pom
[2024-04-12 15:36:36] [build-stdout] [2024-04-12 15:36:36] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/29.0-jre/guava-29.0-jre.pom (11 kB at 182 kB/s)
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[2024-04-12 15:36:36] [build-stdout] [2024-04-12 15:36:36] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/com/google/guava/guava-parent/29.0-jre/guava-parent-29.0-jre.pom (13 kB at 212 kB/s)
[2024-04-12 15:36:36] [build-stdout] [2024-04-12 15:36:36] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.pom
[2024-04-12 15:36:36] [build-stdout] [2024-04-12 15:36:36] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.pom (2.4 kB at 35 kB/s)
[2024-04-12 15:36:36] [build-stdout] [2024-04-12 15:36:36] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/guava-parent/26.0-android/guava-parent-26.0-android.pom
[2024-04-12 15:36:36] [build-stdout] [2024-04-12 15:36:36] [autobuild] [INFO] Downloaded from central: https://repo.maven.apache.org/maven2/com/google/guava/guava-parent/26.0-android/guava-parent-26.0-android.pom (10 kB at 152 kB/s)
[2024-04-12 15:36:36] [build-stdout] [2024-04-12 15:36:36] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/oss/oss-parent/9/oss-parent-9.pom
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[2024-04-12 15:36:36] [build-stdout] [2024-04-12 15:36:36] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.pom
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[2024-04-12 15:36:36] [build-stdout] [2024-04-12 15:36:36] [autobuild] [INFO] Downloading from central: https://repo.maven.apache.org/maven2/org/checkerframework/checker-qual/2.11.1/checker-qual-2.11.1.pom
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[2024-04-12 15:36:41] [build-stdout] [2024-04-12 15:36:41] [autobuild] [INFO] ------------------------------------------------------------------------
[2024-04-12 15:36:41] [build-stdout] [2024-04-12 15:36:41] [autobuild] [INFO] BUILD SUCCESS
[2024-04-12 15:36:41] [build-stdout] [2024-04-12 15:36:41] [autobuild] [INFO] ------------------------------------------------------------------------
[2024-04-12 15:36:41] [build-stdout] [2024-04-12 15:36:41] [autobuild] [INFO] Total time: 9.510 s
[2024-04-12 15:36:41] [build-stdout] [2024-04-12 15:36:41] [autobuild] [INFO] Finished at: 2024-04-12T15:36:41-07:00
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[2024-04-12 15:36:41] [build-stdout] [2024-04-12 15:36:41] No specific JDK inferred from the project being analysed; using the java on the PATH
[2024-04-12 15:36:43] [build-stdout] [2024-04-12 15:36:43] [autobuild] Scanning for files in /home/groups/azalia/amrit/commons-cli...
[2024-04-12 15:36:43] [build-stdout] [2024-04-12 15:36:43] [autobuild] /home/groups/azalia/amrit/foo: Indexing files in in /home/groups/azalia/amrit/commons-cli...
[2024-04-12 15:36:43] [build-stdout] [2024-04-12 15:36:43] [autobuild] Running command in /home/groups/azalia/amrit/commons-cli: [/home/groups/azalia/amrit/codeql/java/tools/index-files.sh, /home/groups/azalia/amrit/foo/working/files-to-index8849380996473278053.list]
Finalizing database at /home/groups/azalia/amrit/foo.
Running pre-finalize script /home/groups/azalia/amrit/codeql/java/tools/pre-finalize.sh in /home/groups/azalia/amrit/commons-cli.
Running command in /home/groups/azalia/amrit/commons-cli: [/home/groups/azalia/amrit/codeql/java/tools/pre-finalize.sh]
[2024-04-12 15:37:32] [build-stderr] Scanning for files in /home/groups/azalia/amrit/commons-cli...
[2024-04-12 15:37:32] [build-stderr] /home/groups/azalia/amrit/foo: Indexing files in in /home/groups/azalia/amrit/commons-cli...
[2024-04-12 15:37:32] [build-stderr] Running command in /home/groups/azalia/amrit/commons-cli: [/home/groups/azalia/amrit/codeql/xml/tools/index-files.sh, /home/groups/azalia/amrit/foo/working/files-to-index1657203010595853730.list]
[2024-04-12 15:37:35] [build-stderr] Scanning for files in /home/groups/azalia/amrit/commons-cli...
Running TRAP import for CodeQL database at /home/groups/azalia/amrit/foo...
Importing TRAP files
Merging relations
Finished writing database (relations: 3.96 MiB; string pool: 2.41 MiB).
TRAP import complete (8.3s).
Cleaning up existing TRAP files after import...
TRAP files cleaned up (4.3s).
Cleaning up scratch directory...
Scratch directory cleaned up (132ms).
Finished zipping source archive (179.46 KiB).
Successfully created database at /home/groups/azalia/amrit/foo.
I would appreciate any assistance in resolving this issue and ensuring that the --build-mode=none option works as expected, preventing the autobuild script from running and building the project.
Thank you for your help!
The text was updated successfully, but these errors were encountered:
The autobuild.sh script is just the entry point to our Java tooling and is invoked whether the autobuilder is used or not. The name is autobuilder.sh since it predates the work on --build-mode=none. The build log you posted shows output that is expected for --build-mode=none.
Specifically the Maven activity you can see here is the result of querying dependencies, not actually building the project, hence Maven's completion in 10 seconds including fetching jar files.
I am encountering an issue with CodeQL version 2.17 when using the new
--build-mode=none
option for Java on CentOS Linux 7 (Core). Despite specifying this option in thecodeql database create
command, the autobuild script is still executed, resulting in the project being built. Are there any workarounds to make this work?Steps to Reproduce
codeql database create
command with the--build-mode=none
option:Expected Behavior
When specifying the
--build-mode=none
option, I expect the autobuild script not to be executed and the project not to be built. I am trying to optimize the speed of the database creation.Actual Behavior
Despite using the
--build-mode=none
option, the autobuild script is still executed, and the project is being built. This can be observed in the logs, where the Maven build process is initiated and dependencies are downloaded.Environment
Additional Information
I would appreciate any assistance in resolving this issue and ensuring that the
--build-mode=none
option works as expected, preventing the autobuild script from running and building the project.Thank you for your help!
The text was updated successfully, but these errors were encountered: