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Pyenv cannot intercept command invocations if you activate a virtualenv with source <...>/activate (that's because it prepends its location to PATH, overriding shims).
You need to rather create an env with Pyenv-Virtualenv and either activate with it with it as well or select like a regular Pyenv-managed version (see https://github.com/pyenv/pyenv-virtualenv?tab=readme-ov-file#usage).
Description
Steps to Reproduce
Full terminal output
terminal.txt
Note
No problem occurs if I remove
eval "$(pyenv init -)"
line from my.zshrc
file and manually executes Python by~/.pyenv/shims/python
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