[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
-
Updated
May 28, 2024 - Shell
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
A Nextflow workflow to generate lift over files for any pair of genomes
Official code repository for GATK versions 4 and up
sra cloner and interacts with the nucleotide sra and allows for multiple sra fetcher
Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
Das Robert Koch-Institut stellt Systeme zur bundesweiten molekularen Surveillance des SARS-CoV-2-Virus bereit. Jedes Labor in Deutschland, das SARS-CoV-2 sequenziert, ist laut der Verordnung zur molekulargenetischen Surveillance des Coronavirus SARS-CoV-2 verpflichtet, dem Robert Koch-Institut die Sequenz- und zugehörige Metadaten zu übermitteln.
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
Small python tool for in-scale drawings viruses genome scemes
🌳 Human ancestry inference from genomic data
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
A visualization grammar and GPU-accelerated toolkit for genomic data
Interactive visualizer ad manual scaffolder of Hi-C contact maps. All-in-one Java-based implementation.
The genome of the contractile demosponge Tethya wilhelma
Evaluating genome assemblies
A bioinformatic toolkit to align genome assemblies into pangenome graphs
Personal Website with Blogposts, Achievements and Ideas
Synteny Mapping and Analysis Program
Add a description, image, and links to the genome topic page so that developers can more easily learn about it.
To associate your repository with the genome topic, visit your repo's landing page and select "manage topics."