Data intensive science for everyone.
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Updated
Jun 12, 2024 - Python
Data intensive science for everyone.
A collection of Galaxy-related training material
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Official code repository for GATK versions 4 and up
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Java utilities for Bioinformatics
Pathogen NGS Documentary
SortMeRNA: next-generation sequence filtering and alignment tool
Tools for working with genomic and high throughput sequencing data.
R package for analyzing single-cell RNA-seq data
A collection of awesome things regarding all omics.
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models f…
UGENE is free open-source cross-platform bioinformatics software
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
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