Official code repository for GATK versions 4 and up

A short tandem repeat (STR) genotyping and analysis toolkit for long reads

Cloud agnostic genomics analysis, scientific computation and storage platform

A collection of Galaxy-related training material

Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

Data intensive science for everyone.

A Snakemake workflow to split, filter, normalize, integrate and select highly variable features of count matrices resulting from experiments with sequencing readout (e.g., RNA-seq, ATAC-seq, ChIP-seq, Methyl-seq, miRNA-seq,...) including diagnostic visualizations.

Detect iSNV and construct whole viral genomes from metagenomic samples

An R-package for daily tasks required to handle biological data as well as avoid re-coding of small functions for quick but necessary data management.

This GitHub repository provides a comprehensive collection of commands and scripts commonly used while analyzing sequencing data.

sRNAflow – a tool for analysis of small RNA-seq data

Rust crates for working with Workflow Description Language (WDL) documents.

Application for analysis of targeted metagenomics sequencing data. Intended for use with multiplexed Illumina short-read data generated after enrichment.

Characterization of small RNA pathways

Exon is an OLAP query engine specifically for biology and life science applications.

DNA and cDNA sequence analysis

Reconstruction and analysis of viral and host genomes at multi-organ level

A cool place to store your Hi-C

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

Java utilities for Bioinformatics