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Moad dataset broken archive #198

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rpowalski opened this issue Mar 12, 2024 · 4 comments
Open

Moad dataset broken archive #198

rpowalski opened this issue Mar 12, 2024 · 4 comments

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@rpowalski
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Hello Team,
I have some trouble with following the dataset loader for the Moad dataset.
This line suggests that there should be a directory pdb_ligand in the moad archive.

I downloaded and extracted the archive shared in here, but this directory is missing. To be sure I did it twice on different machines.

Here is what I see when I extracted the archive. Can you please share some advice on this?

obraz
@Alain-chavanieu
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I had the same as the download failed twice. Then it was ok . the un tar take time. Howevar, I had another problem when I tried to use NotADirectoryError: [Errno 20] Not a directory: '.....DiffDock/data/BindingMOAD_2020_processed/pdb_protein/._6hd6_1_protein.pdb/._6hd6_1_protein.pdb_protein.pdb'

@amorehead
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@rpowalski, I also am not seeing the pdb_ligand directory in the downloaded MOAD archive. This is after trying to download it using wget three separate times.

@Harper-Hua
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Same here. Couldn't find pdb_ligand.

@amorehead
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amorehead commented May 6, 2024

@jsilter, any chance you might be able to confirm the issue we are encountering here?

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4 participants