Releases: labdao/plex
Releases · labdao/plex
v0.7.0
What's Changed
- Codebase cleaned up (~1000 lines removed)
- Equibind modified to take .mol2 files as input
- RMSD tool onboarded
- ODDT tool debugged
- Diffdock tool glob pattern matching modified
- IPFS CIDs being written to job io.json for input and output files
New Contributors
Full Changelog: v0.6.1...v0.7.0
Contributors
hevans66
Assets 11
v0.6.1
Changelog
- d0f2b69 Update upgrade.go (#274)
- a64fca3 upgraded bacalhau and go pkg plus added python notebook (#267)
- 2d93a74 update gnina tool and create a diffdock-ligand-refinement config (#266)
- 41333cf add optional memory to tool config (#261)
- 21c7395 getting started gif for readme
- 5260c00 update README (#264)
v0.6.0
8d4ec20
This commit was signed with the committer’s verified signature.
acashmoney
Aakaash Meduri
Changelog
- 8d4ec20 upgrades currentplexversion for 0.6.0
- 88134a5 223 onboard rfdiffusion (#240)
- ae81315 deprecation notice for -app flag usage (#237)
- 4ddb753 generate io works recursively (#251)
- f01f595 227 ci update for testing tools using tool configs (#250)
- ebae49a reconfigures colabfold tool configs and moves them from inprogress (#253)
- 981547d 217 tooltobacalhau (#242)
- 7a016e7 bam2fastq.json (#238)
- 46af61b remove w3s (#248)
- d1ca55a implement a CLI recorder for plex commands (#245)
- 1200270 Update README.md (#228)
- 4eca357 add concurrency around process io task (#226)
v0.5.1
v0.5.0
bcdbd36
This commit was signed with the committer’s verified signature.
acashmoney
Aakaash Meduri
v0.4.1
v0.4.0
Features
✅ Colab Protein folding ⚛️
✅ Juypter notebook deploy 🪐
✅ Local Docker flag 🐳
✅ CI test for Equibind client call 👷🏼
✅ Release CI workflow for apps 🏗️
✅ Install script animation 💅🏼
✅ Access token 🗝️
Changelog
- c23395d 175 add access token to code (#178)
- 3b0a937 115 create a local flag that returns a docker command based on the plex input to facilitate debugging of apps (#172)
- b124f0b 135 create a pre release testing workflow for the client side (#173)
- 52f2183 onboard protein folding app (#166)
- 659e0c1 136 create staging node based on a p3 (#137)
- 6c232c4 animates logo print in install.sh (#162)
- 686b9cc Update README.md
- 2f190da Update README.md
- e01b978 pass through proteins in diffdock (#163)
- 60f5de0 156 create a ci test for the client side (#161)
- 59eb775 Update README.md
- f0b9856 Update install.sh
- a7b56be modifies plex download links in install.sh (#144)
- 0dfb1f4 default bacalhau api host (#143)
- d39de14 Remove GNINA and folding apps for 0.3.0 (#139)
- 6f9340e Update README.md
- faf7196 Update instruction_template.jsonl
- 553007e remove bacalhau install from install script (#130)
- 058ff46 add code warnings around required BACALHAU_API_HOST (#131)
- d105b50 Update instruction_template.jsonl
- 947b7f4 Update app.jsonl
- 0f9ee68 Update app.jsonl
- 2ac3773 add folding apps (#114)
- 9d93e8c Update instruction_template.jsonl
- ebb5ad3 Update app.jsonl
- 6bcf1f6 add docking+scoring in gnina (#128)
- ab2857e make cli use direct ipfs post (#126)
- ab6d3db Update instruction_template.jsonl
- 89f0073 Update instruction_template.jsonl
- 491bbf4 Update instruction_template.jsonl
- 39561ee Update instruction_template.jsonl
- 82f8062 add aggregator (#125)
- 3063e69 Update README.md
- 1b40585 Update install.sh
- ce88033 add directory to ipfs node via http (#120)
- 54d158c updates install links for new releases (#119)
v0.3.0
9b0f953
This commit was signed with the committer’s verified signature.
acashmoney
Aakaash Meduri
Changelog
- 9b0f953 modifies plex download links
- 0dfb1f4 default bacalhau api host (#143)
- d39de14 Remove GNINA and folding apps for 0.3.0 (#139)
- 6f9340e Update README.md
- faf7196 Update instruction_template.jsonl
- 553007e remove bacalhau install from install script (#130)
- 058ff46 add code warnings around required BACALHAU_API_HOST (#131)
- d105b50 Update instruction_template.jsonl
- 947b7f4 Update app.jsonl
- 0f9ee68 Update app.jsonl
- 2ac3773 add folding apps (#114)
- 9d93e8c Update instruction_template.jsonl
- ebb5ad3 Update app.jsonl
- 6bcf1f6 add docking+scoring in gnina (#128)
- ab2857e make cli use direct ipfs post (#126)
- ab6d3db Update instruction_template.jsonl
- 89f0073 Update instruction_template.jsonl
- 491bbf4 Update instruction_template.jsonl
- 39561ee Update instruction_template.jsonl
- 82f8062 add aggregator (#125)
- 3063e69 Update README.md
- 1b40585 Update install.sh
- ce88033 add directory to ipfs node via http (#120)
- 54d158c updates install links for new releases (#119)
v0.2.0-alpha
Changelog
- 8ae568a add quote mark to bacalhau cmd (#111)
- d029145 Update install.sh (#117)
- bf06736 update bacalhau (#116)
- 4cbcc4e Update README.md
- 9c4c6ba Update README.md
- c12ff8c chore(bacalhau): update pkg import (#103)
- 2dabfda abl kinase (#96)
- 30c98f2 Update README.md
- 082899b Update README.md
- 2436011 Update install.sh (#105)
v0.1.0-alpha
Changelog
- 1355545 Update releaser.yml
- c0b4b15 Release (#102)
- ea01d93 add selector labdao to bacalhau (#98)
- ea04409 merging oddt scorer
- ee27edb Update releaser.yml
- fcb572f Update releaser.yml
- 78424b2 go build distribution
- 8fcf495 bacalhau debugging phase 1 (#97)
- 03ed817 Update README.md
- 8e7b4fc Update go.mod
- 633b63a Update README.md
- aec6433 re org repo to match large std go project (#90)
- e8c7998 first config, pending additional scores and VS score
- 8bda39d Update README.md
- afe8c03 Create LICENSE.md
- 6f9430f Update install.sh
- 99bfa4b 78 integrate gnina container into app (#80)
- 41178a0 74 feed bacalhau outputs inside generated labdao job directory (#76)
- d797bd9 Update README.md
- ff357db Acashmoney patch 1 (#81)
- 1cd02b0 Update install.sh
- 790aeab install script with bacalhau install and w3s token prompt (#77)
- 03aec7a 72 run equibind on plex (#75)
- 5ab4268 62 run bacalhau from golang (#68)
- 7083a65 Merge pull request #70 from labdao/63-pin-directoryfiles-to-ipfs-from-go-program
- 24b6c55 Merge branch 'main' into 63-pin-directoryfiles-to-ipfs-from-go-program
- e3b721c modifies go.yml workflow
- 0c841e9 removes executable
- 9763a81 responds to PR feedback
- 64dea62 Update go.yml (#69)
- 9dd382d testputfile unit test added, gitignore updated, .txt file moved to test-directory
- df876af moves ipfs.go into plexus dir and updates package names to main
- 802fe07 Merge remote-tracking branch 'origin' into 63-pin-directoryfiles-to-ipfs-from-go-program
- d2a7c87 renames go file
- e5f5a44 Create go.yml
- 1cfdf41 Merge pull request #66 from labdao/61-create-indexjson-from-file-structure
- 98daecc implement basic unit test
- 4e9d35c fmt
- 88aa2b3 refactored utils and simplified function names
- bcb904f refactor createindexjsonl, needs rename
- b4f0974 update utils and remove go.mod and .sum
- 60e68e5 modifies file name per go naming conventions
- cf6def0 getfiles parsing functional
- 6dc1566 put files and directory functions outputting cids, need to modify getFiles to display upload contents
- 10f39ae remoe plexutil
- c6919a3 cleaning up before merge
- 2783839 create index csv
- 6a0910b debugging index
- 0482b9b debugging csv creation
- 837a604 dirty parsing of files for index.csv
- 3188e9a create volume returns path to new files
- 62f97a9 create volume returns new file index
- b8a6337 added prefix to function
- ef10016 no whitespace
- e10bc35 uuid typing
- 94981bc clean up main
- 6335566 fix CopyFile issue
- 515a60a volume creation
- 9f980cd make status messages more precise
- 836a2d8 create layer argument
- ebd23eb introduced appconfig validation
- bc9d854 comment
- 9626b88 listing files that match a pattern
- 7232dd2 introduced breaking change with dir to directory rename
- 67abac8 Delete demo.sh (#56)
- 92e9452 add cp of protein to diffdock (#55)
- f975b09 51 add test csv based on pre selected proteins (#53)
- 0f478af modifies install script to include ipfs and pip installs (#52)
- 1d7f70d 6 create low level instructions on how to run diffdock (#47)
- bb781cb 43 run diffdock on time splitpdbind in ticket mode (#44)