{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":24037702,"defaultBranch":"master","name":"phyml","ownerLogin":"stephaneguindon","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2014-09-15T00:57:10.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/5633201?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1717493516.0","currentOid":""},"activityList":{"items":[{"before":"241e22d55c909d7629b658bd6dd3be2a0dd11216","after":"132bc6ce41f0663568116a5aa82997c87a426030","ref":"refs/heads/master","pushedAt":"2024-06-04T07:44:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Cross-validation in PhyREX","shortMessageHtmlLink":"Cross-validation in PhyREX"}},{"before":"51de8b8a005be2fd1254c5fc441590fd704f5f77","after":"241e22d55c909d7629b658bd6dd3be2a0dd11216","ref":"refs/heads/master","pushedAt":"2024-06-04T07:34:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Compiled test","shortMessageHtmlLink":"Compiled test"}},{"before":"6f9014871da8c1d7c69d6df7e9ed77d72d40f475","after":"51de8b8a005be2fd1254c5fc441590fd704f5f77","ref":"refs/heads/master","pushedAt":"2024-05-27T16:52:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Tested Node velocity moves","shortMessageHtmlLink":"Tested Node velocity moves"}},{"before":"daf6c9104e4b63b601a95e4a862fcc19c6643fbb","after":"6f9014871da8c1d7c69d6df7e9ed77d72d40f475","ref":"refs/heads/master","pushedAt":"2024-05-07T08:36:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Implemented correlated velocities move","shortMessageHtmlLink":"Implemented correlated velocities move"}},{"before":"0438af93e59b152c8575bd8ba0290d72a5f78cc8","after":"daf6c9104e4b63b601a95e4a862fcc19c6643fbb","ref":"refs/heads/master","pushedAt":"2024-04-29T17:16:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Amended ouput of params in log file for PhyREX","shortMessageHtmlLink":"Amended ouput of params in log file for PhyREX"}},{"before":"ea339ab02be8e42844fe42c853ab15a571298572","after":"0438af93e59b152c8575bd8ba0290d72a5f78cc8","ref":"refs/heads/master","pushedAt":"2024-04-29T09:02:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Amended ouput of params in log file for PhyREX","shortMessageHtmlLink":"Amended ouput of params in log file for PhyREX"}},{"before":"619f99370fb9c02705f680c9890ee2721f389b50","after":"ea339ab02be8e42844fe42c853ab15a571298572","ref":"refs/heads/master","pushedAt":"2024-04-28T18:14:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Post and pre-order traversal for lk calculation under PIV modesl","shortMessageHtmlLink":"Post and pre-order traversal for lk calculation under PIV modesl"}},{"before":"f3b45c42c16a46899fa652d66e9e0fd31168f597","after":"619f99370fb9c02705f680c9890ee2721f389b50","ref":"refs/heads/master","pushedAt":"2024-04-15T15:16:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Started generic implementation of continuous models","shortMessageHtmlLink":"Started generic implementation of continuous models"}},{"before":"6e9e657e9d04f77ec0c739c6fa5671619bfee37e","after":"f3b45c42c16a46899fa652d66e9e0fd31168f597","ref":"refs/heads/master","pushedAt":"2024-04-09T08:49:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Fix variance of observational model","shortMessageHtmlLink":"Fix variance of observational model"}},{"before":"afa30e37997cbf4ed967751c74292dd75fc98f51","after":"6e9e657e9d04f77ec0c739c6fa5671619bfee37e","ref":"refs/heads/master","pushedAt":"2024-04-07T11:52:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Fix variance of observational model","shortMessageHtmlLink":"Fix variance of observational model"}},{"before":"5ed18e3ebca03c57874f6ce97601f522a161905d","after":"afa30e37997cbf4ed967751c74292dd75fc98f51","ref":"refs/heads/master","pushedAt":"2024-04-05T19:39:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Fix variance of observational model","shortMessageHtmlLink":"Fix variance of observational model"}},{"before":"122fa0b006bbcdbc6f3fc005bd623d3dab03613e","after":"5ed18e3ebca03c57874f6ce97601f522a161905d","ref":"refs/heads/master","pushedAt":"2024-04-05T13:09:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Fix variance of observational model","shortMessageHtmlLink":"Fix variance of observational model"}},{"before":"5d6d9006e43e8c135389b702ec14ea45be20f4b1","after":"122fa0b006bbcdbc6f3fc005bd623d3dab03613e","ref":"refs/heads/master","pushedAt":"2024-04-05T12:34:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Fix variance of observational model","shortMessageHtmlLink":"Fix variance of observational model"}},{"before":"f112e66511211be108fadbbaa66c242afeebdc56","after":"5d6d9006e43e8c135389b702ec14ea45be20f4b1","ref":"refs/heads/master","pushedAt":"2024-03-23T13:34:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Initialize velocities in a proper manner","shortMessageHtmlLink":"Initialize velocities in a proper manner"}},{"before":"83378eb009cb2c0b933d4c931d2b2f365ce7185d","after":"f112e66511211be108fadbbaa66c242afeebdc56","ref":"refs/heads/master","pushedAt":"2024-03-22T08:41:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Initialized FreeRate model properly so that user-defined values can be used meaningfuly","shortMessageHtmlLink":"Initialized FreeRate model properly so that user-defined values can b…"}},{"before":"5082fa55e09469fc6db6707b7d615adf435a8789","after":"83378eb009cb2c0b933d4c931d2b2f365ce7185d","ref":"refs/heads/master","pushedAt":"2024-03-13T20:31:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Removed fast optimization option for LG4X","shortMessageHtmlLink":"Removed fast optimization option for LG4X"}},{"before":"aca47132bcff7d562c4a2e3982ebb7451d6fd31d","after":"5082fa55e09469fc6db6707b7d615adf435a8789","ref":"refs/heads/master","pushedAt":"2024-03-06T08:42:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Set root to Jericho in HBV analysis so as to match Cavalli-Sforza","shortMessageHtmlLink":"Set root to Jericho in HBV analysis so as to match Cavalli-Sforza"}},{"before":"d114ae961934e81ed55c17389b8a4563a73f084d","after":"aca47132bcff7d562c4a2e3982ebb7451d6fd31d","ref":"refs/heads/master","pushedAt":"2024-03-04T12:19:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Amended version for formatting step in Philippe's HBV analyses","shortMessageHtmlLink":"Amended version for formatting step in Philippe's HBV analyses"}},{"before":"a78289ad78c376dfb0549959a93d46b9c8cef07b","after":"d114ae961934e81ed55c17389b8a4563a73f084d","ref":"refs/heads/master","pushedAt":"2024-02-29T06:38:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Removing scall-all operator on velocities as it slows down convergence on WNV data set","shortMessageHtmlLink":"Removing scall-all operator on velocities as it slows down convergenc…"}},{"before":"f4daf91c5c52acfc383fbff8fbc0ecf477f543cd","after":"a78289ad78c376dfb0549959a93d46b9c8cef07b","ref":"refs/heads/master","pushedAt":"2024-02-23T08:31:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Finished (kind of) with comparison of p(y,y) and p(x*,y,y) between PhyREX, BEAST and R","shortMessageHtmlLink":"Finished (kind of) with comparison of p(y,y) and p(x*,y,y) between Ph…"}},{"before":"8eff3a65627dc10c1ec9106159059f59cfce5dc9","after":"f4daf91c5c52acfc383fbff8fbc0ecf477f543cd","ref":"refs/heads/master","pushedAt":"2024-02-07T13:19:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Removed Philippe format conversion stuff","shortMessageHtmlLink":"Removed Philippe format conversion stuff"}},{"before":"c3d04c2fb8b317ba69fd2aae3b1b037a85fc5922","after":"8eff3a65627dc10c1ec9106159059f59cfce5dc9","ref":"refs/heads/master","pushedAt":"2024-02-07T13:19:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Philippe format conversion stuff","shortMessageHtmlLink":"Philippe format conversion stuff"}},{"before":"d698bcc48cd7a4961c91f71de419b821ebdd92ba","after":"c3d04c2fb8b317ba69fd2aae3b1b037a85fc5922","ref":"refs/heads/master","pushedAt":"2023-12-07T14:54:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Avoid multiple mergers when converting tree to ldsk structure","shortMessageHtmlLink":"Avoid multiple mergers when converting tree to ldsk structure"}},{"before":"d698bcc48cd7a4961c91f71de419b821ebdd92ba","after":null,"ref":"refs/tags/WNV_predictions","pushedAt":"2023-12-07T14:53:03.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"}},{"before":"31057b0c5c684149bf7869a721a3af8623abe184","after":"d698bcc48cd7a4961c91f71de419b821ebdd92ba","ref":"refs/heads/master","pushedAt":"2023-12-07T12:57:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"...and processing of subtrees (Sub_Trees function)","shortMessageHtmlLink":"...and processing of subtrees (Sub_Trees function)"}},{"before":"74598562aa8e3a28e49226ff405ac6957fca045b","after":"31057b0c5c684149bf7869a721a3af8623abe184","ref":"refs/heads/master","pushedAt":"2023-12-07T12:56:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Overhaul of node and edge label reading","shortMessageHtmlLink":"Overhaul of node and edge label reading"}},{"before":"e1b74580a1867bc0109b142ee2a9939a69cee0fa","after":"74598562aa8e3a28e49226ff405ac6957fca045b","ref":"refs/heads/master","pushedAt":"2023-11-20T09:45:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Fixed issue in reading input trees","shortMessageHtmlLink":"Fixed issue in reading input trees"}},{"before":"c3f04b467d9e2a2851458de29987d70376e06f21","after":"e1b74580a1867bc0109b142ee2a9939a69cee0fa","ref":"refs/heads/master","pushedAt":"2023-11-02T10:47:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Converter BEAST to PhyREX format","shortMessageHtmlLink":"Converter BEAST to PhyREX format"}},{"before":"a692cd2bd7141869d8af9c2fc7d41bc3defb2d77","after":"c3f04b467d9e2a2851458de29987d70376e06f21","ref":"refs/heads/master","pushedAt":"2023-11-01T12:27:37.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Merge pull request #187 from vincent-lefort/master\n\nFixed bootstrap MPI bug: now computing the exact number of required b…","shortMessageHtmlLink":"Merge pull request #187 from vincent-lefort/master"}},{"before":"6a26429471f190dcfdba9de3042aae813880997b","after":"a692cd2bd7141869d8af9c2fc7d41bc3defb2d77","ref":"refs/heads/master","pushedAt":"2023-11-01T12:25:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"stephaneguindon","name":"Stephane Guindon","path":"/stephaneguindon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5633201?s=80&v=4"},"commit":{"message":"Added observational model to PHYREX","shortMessageHtmlLink":"Added observational model to PHYREX"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEW7uAlQA","startCursor":null,"endCursor":null}},"title":"Activity · stephaneguindon/phyml"}