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@cytomining

cytomining

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Welcome to Cytomining!

Cytomining is a software ecosystem that maintains essential tools, workflows, and best practices for single-cell image-based profiling and microscopy data analysis research.

See the links below to get started!

Pinned

  1. DeepProfiler DeepProfiler Public

    Morphological profiling using deep learning

    Python 95 40

  2. pycytominer pycytominer Public

    Python package for processing image-based profiling data

    Python 69 32

  3. cytominer cytominer Public

    Methods for Image-Based Cell Profiling

    R 46 28

  4. cytominer-eval cytominer-eval Public

    Common Evaluation Metrics for DataFrames

    Python 7 10

  5. profiling-recipe profiling-recipe Public

    Image-based Profiling Recipe

    Python 8 26

  6. CytoTable CytoTable Public

    Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.

    Python 4 5

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