latent-spaces

This is the github repo from which we can all collaborate!

benchmark datasets

Which benchmark data will we use [TODO: link to said datasets]

pre-processing

What are best practices for pre-processing each dataset? Why? [TODO: someone fill this out]

tools

Which tools are each group member planning on using? [TODO: a table of PI, tool name, link to code, link to paper]

standardized file formats

[TODO: ask Elana how to frame and get this started]

• Input file format (gene-cell expression values, metadata, uncertainty estimates)
• Output file formats (representation of latent spaces, which aspects are shared?, which aspects are method specific?)