genome-grist README

genome-grist analyzes the strain composition of microbial metagenomes using minimum metagenome covers and produces a variety of compositional and taxonomic summaries.

Check out the quick start! And please also see the rest of the docs for more information!

Example: the strain composition of a gut microbiome (iHMP)

This figure was autogenerated by genome-grist.

CTB 01/22

Name		Name	Last commit message	Last commit date
Latest commit History 215 Commits
.github		.github
doc		doc
genome_grist		genome_grist
inputs		inputs
outputs.test		outputs.test
tests		tests
.gitignore		.gitignore
LICENSE.txt		LICENSE.txt
MANIFEST.in		MANIFEST.in
Makefile		Makefile
README.md		README.md
conf-private.yml		conf-private.yml
conf.yml		conf.yml
environment.yml		environment.yml
hash-upsetr-example.ipynb		hash-upsetr-example.ipynb
mkdocs.yml		mkdocs.yml
setup.cfg		setup.cfg
setup.py		setup.py
snakemake.slurm		snakemake.slurm

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dib-lab/genome-grist

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genome-grist README

Example: the strain composition of a gut microbiome (iHMP)

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