This is cli for calling Ensembl API.
This project is currently at the experimental stage.
Not all endpoints are supported.
Only following endpoints and data types are callable.
| Endpoint | Availabe Options |
|---|---|
| GET /sequence/id | object_type=transcript, content-type=text/xfasta, type |
Binaries are available at the release paga of Github.
This will get transctipt as fasta format.
$ ensemble_api_cli sequence id <ID>
You can specify a file including IDs in each line.
Results are outputted at ./result directory.
$ ensembl_api_cli --directory <Path to directory>
Help option can be put for any command or subcommand.
$ ensembl_api_cli --help
$ ensembl_api_cli sequence id --help