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Achievements

Achievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: YOLOAchievement: Arctic Code Vault ContributorAchievement: StarstruckAchievement: Pull Sharkx2
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niemasd/README.md

My name is (Alexander) Niema Moshiri, and I am an Associate Teaching Professor in the Computer Science & Engineering Department at the University of California, San Diego. I work on computational biology, with a research focus on viral phylogenetics and epidemiology. I also place a heavy emphasis on teaching, namely on the development of online educational content, primarily Massive Adaptive Interactive Texts (MAITs). You can find more information about me on my website or in my Curriculum Vitae (CV).

Pinned

  1. ViralMSA ViralMSA Public

    Reference-guided multiple sequence alignment of viral genomes

    Python 56 8

  2. ViralConsensus ViralConsensus Public

    Fast viral consensus genome reconstruction

    C++ 20 2

  3. FAVITES-Lite FAVITES-Lite Public

    FAVITES-Lite: A lightweight framework for viral transmission and evolution simulation

    Python 4 5

  4. TreeSwift TreeSwift Public

    TreeSwift: Fast tree module for Python 3

    Python 71 13

  5. TreeCluster TreeCluster Public

    Efficient phylogenetic clustering of viral sequences

    Python 66 9

  6. MemCard-PRO-Renamer MemCard-PRO-Renamer Public

    Convert MemCard PRO folders to/from human-readable names

    Python 21